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Photo: Hebrew University of Jerusalem.
In Israel
, research with genetically modified bacteria is creating a new way to detect hidden land mines.

Giving credit where it’s due, I first learned at PRI’s The World that e coli is being used to detect forgotten land mines. You can listen to the radio broadcast here.

Then I went online and found a variety of articles on the research. This one is from the New York Times. Elizabeth Landau writes, “Land mines left over from bygone conflicts — or those still being fought — pose silent threats to millions of people around the world. With the help of bacteria that glow in their presence, these hidden hazards may one day be found and safely removed or destroyed.

“Researchers at the Hebrew University of Jerusalem have spent a decade developing living land mine sensors using E. coli bacteria. In recent studies, they describe their latest progress. By using genetic engineering, they can turn each bacterium into ‘a miniature firefly’ in the presence of a chemical associated with the explosives, said Shimshon Belkin, the Hebrew University microbiologist leading the research.

“In 2019, more than 5,500 people were killed or injured by land mines and explosive remnants of war, and 80 percent of them were civilians, according to the International Campaign to Ban Landmines. Anti-personnel land mines, which can be only a few inches across and easily concealed, are especially dangerous. Estimates vary for the worldwide count of buried land mines, but they are as high as 110 million.

“Many strategies have been tried to locate land mines, such as using metal detectors and training detection animals, including an award-winning rat that helped locate 71 land mines before it retired. Each method balances benefits with risks and costs.

“The idea of rewiring bacteria to sense land mines originated with Robert Burlage, then at Oak Ridge National Laboratory in Tennessee.

In the mid-1990s, Dr. Burlage worked on getting bacteria to light up in response to organic waste and mercury. Looking for a new application for this technique, he got the idea to try targeting land mine chemicals.

“Although Dr. Burlage conducted a few small field tests, he was unable to secure more funding and moved on. ‘My tale of woe,’ said Dr. Burlage, now a professor at Concordia University Wisconsin. …

“Bacteria are cheap and expendable and can be spread over a lot of ground. And they are relatively quick at reporting back — within hours, or up to a day, they either glow or they don’t.

“In studies published in the past year in Current Research in Biotechnology and Microbial Biotechnology, Dr. Belkin and his team describe tinkering with two key components of the E. coli genetic code: pieces of DNA called ‘promoters’ that act as on/off switches for genes, and ‘reporters’ that prompt light-emitting reactions. To produce this effect, researchers borrowed genes from marine bacteria that naturally emit light in the ocean.

“Scientists attuned the bacteria to a chemical called [DNT]. DNT vapor seeps into soil surrounding a land mine, and the bacteria can sniff it out. …

“One key challenge the group is working to overcome is safely locating the bioluminescent bacteria in a real minefield. When they detect land mines, their glow is so faint that light from the moon, stars or nearby cities could drown it out. …

“Aharon J. Agranat, a bioengineer at Hebrew University, and other researchers reported in April in the journal Biosensors and Bioelectronics that they had developed a device that shields the bacteria and detects their glow. This sensor system can then report its findings to a nearby computer, but it hasn’t been tested outside a laboratory setting. The researchers have also recently conducted field tests in Israel, collaborating with the Israeli army to ensure the safety of the experiments, as well as an Israeli defense company. The results of these tests have not been published, but Dr. Belkin called them ‘generally very successful.’ ” More here.

I know a little about the scourge of land mines from reading Laos-based mysteries by artist, educator, and activist Colin Cotterill. If you like fiction about foreign countries that not only introduces you to new geographies but also addresses the challenges to be found there, you will probably love Dr. Siri of The Coroner’s Lunch.

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Photo: ArtTrav.
The Medici Chapel in Florence recently got a new kind of cleaning. This is the “before” shot of Michelangelo’s sculptures of Dusk and Dawn. See the New York Times for how they look today.

How do you clean a masterpiece? Carefully, My Friends. Especially if much of the damage was caused by the decomposing body of a long-dead Medici.

Jason Horowitz reports at the New York Times that you may also want to keep any strange method of cleaning a secret until after it actually succeeds.

“As early as 1595, descriptions of stains and discoloration began to appear in accounts of a sarcophagus in the graceful chapel Michelangelo created as the final resting place of the Medicis. In the ensuing centuries, plasters used to incessantly copy the masterpieces he sculpted atop the tombs left discoloring residues. His ornate white walls dimmed.

“Nearly a decade of restorations removed most of the blemishes, but the grime on the tomb and other stubborn stains required special, and clandestine, attention. … Restorers and scientists quietly unleashed microbes with good taste and an enormous appetite on the marbles, intentionally turning the chapel into a bacterial smorgasbord.

“ ‘It was top secret,’ said Daniela Manna, one of the art restorers. …

“ [A team headed by] Monica Bietti, former director of the Medici Chapel’s Museum … used bacteria that fed on glue, oil and apparently [a dead Medici’s] phosphates as a bioweapon against centuries of stains.

“In November 2019, the museum brought in Italy’s National Research Council, which used infrared spectroscopy that revealed calcite, silicate and other, more organic, remnants on the sculptures and two tombs that face one another across the New Sacristy.

“That provided a key blueprint for Anna Rosa Sprocati, a biologist at the Italian National Agency for New Technologies, to choose the most appropriate bacteria from a collection of nearly 1,000 strains, usually used to break down petroleum in oil spills or to reduce the toxicity of heavy metals. …

“Then the restoration team tested the most promising eight strains behind the altar, on a small rectangle palette spotted with rows of squares like a tiny marble bingo board. All of the ones selected, she said, were nonhazardous and without spores.

“ ‘It’s better for our health,’ said Manna, after crawling out from under the sarcophagus. ‘For the environment, and the works of art.’ …

“In February 2020 Covid hit, closing the museum in March and interrupting the project. … The bacteria strains got back to the Medici Chapel, which had reopened with reduced hours, in mid-October. Wearing white lab coats, blue gloves and anti-Covid surgical masks, Sprocati and the restorers spread gels with the SH7 bacteria — from soil contaminated by heavy metals at a mineral site in Sardinia — on the sullied sarcophagus of Lorenzo di Piero, Duke of Urbino, buried with his assassinated son Alessandro.

“ ‘It ate the whole night,’ said Marina Vincenti, another of the restorers. …

“In 2016, [she had] attended a conference held by Sprocati and her biologists. (‘An introduction to the world of microorganisms,’ Sprocati called it.) They showed how bacteria had cleaned up some resin residues on Baroque masterpiece frescoes in the Carracci Gallery at Palazzo Farnese in Rome. Strains isolated from mine drainage waters in Sardinia eliminated corrosive iron stains in the gallery’s Carrara marble.

“When it came time to clean the Michelangelos, Vincenti pushed for a bacterial assist.

“ ‘I said, “OK,” said [Paola D’Agostino, who runs the Bargello Museums]. ‘ “But let’s do a test first.” ‘

“The bacteria passed the exam and did the job.”

More at the Times, here.

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Our friend Mika is back in Hokkaido these days, after several years in New York working in restaurants and perfecting her “house” dancing. But every once in a while she ventures out to help on a street art project. Here is her friend Florence Blanchard’s mural for CBM Network (Crossing Biological Membranes) at the University of Sheffield in England.

At her WordPress site, Florence explains what the art represents, “I am delighted to present my newest mural here – a collaboration with CBMNet at the University Of Sheffield, in conjunction with Festival Of The Mind 2016 / Fear of the Unseen: Engineering Good Bacteria.

“The ‘Crossing Biological Membranes Network’ is composed of scientists working to understand the mechanisms by which substances are transported into, within, and out of cells. Their ultimate aim is to produce knowledge which will enable the development of new technologies in the Industrial Biotechnology and Bioenergy sector (eg: producing biofuels using E coli bacteria).

“My role in this collaboration has been to translate the CBMNet area of work into a large outdoor mural located within the university campus. For this occasion I have presented my interpretation of a detail of a cell membrane as seen under an electron microscope, having undergone a cryofracture.

“A cryofracture is a procedure in which the sample is frozen quickly and then  broken with a sharp blow so you are able to study its structure in very close detail – Imagine breaking a bar of chocolate with hazelnuts, this way you can see how hazelnuts are positioned inside the bar.”

“For an online animation of a biomembrane cryofracture follow this link: http://www.sciencephoto.com/media/530082/view.”

Check out the WordPress post.

Photo: Florence Ema Blanchard
Blanchard’s street art is tied to a scientific quest: “Engineering Good Bacteria.”

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The humble horseshoe crab is a reminder of prehistoric times. Public Radio International’s Living on Earth recently devoted a segment to this curious character.

From the transcript of the show …

Steve Curwood: “For healthy oceans, it’s not enough to protect just the top of the food chain – the cod or halibut or swordfish we eat. The bottom of the food chain is vital too. That could be the plankton or the tiny forage fish eaten by many species – or it could be the extraordinary prehistoric-looking horseshoe crab.

“These helmet-shaped arthropods have been around for millions of years, and up and down the east coast of the US, volunteers come out to count them as the females come ashore to spawn. On Cape Cod, as Karen Zusi reports, scientists and volunteers are tagging and labeling the crabs to help conserve them.”

Karen Zusi: “There are a lot of reasons why someone might appreciate the lowly horseshoe crab. Eel and conch fishermen use them as bait, and medical companies draw blood from the animals. Horseshoe crab blood will clot in the presence of bacteria, so these companies can use the crab’s blood to make sure vaccines and medical implants are free of germs. Their blood is worth sixty thousand dollars a gallon.

“But horseshoe crab populations are dropping. To preserve them, scientists and volunteers on Cape Cod are wading into the water to count and tag the animals.

“Special labels help them keep track [says] Mark Faherty, the science coordinator at Audubon’s Wellfleet Bay Sanctuary. …

“The Massachusetts Audubon Society just recruited graduate student Michael Long to lead their newest horseshoe crab study. With researchers from the University of Massachusetts, he will be tagging the crabs this summer with a telemetry [label], glued onto the crab’s shell.”

Faherty: “My acoustic study is going to be putting on acoustic receivers out in the bay, and acoustic markers on the crabs. The receivers have about a 600-meter detection radius so anytime a crab that’s marked with an acoustic receiver comes within 600 meters of that receiver, it will mark where it is. So based on where each crab pings, you can kind of track its movements around the bay.”

Zusi: “None of this would be possible without the Audubon Society’s volunteers. They come from all walks of life.

“At an Audubon horseshoe crab conference, Long organizes new volunteers to help him count horseshoe crabs on the beach, and Faherty trains them in the basic survey procedures. …

“Once they got down to business, the volunteers were trained to divide the beach into small sections, count the horseshoe crabs, and record all of their information. The volunteers go out to survey when female crabs are coming to lay their eggs in the sand. Males follow to fertilize the eggs after they’re laid.”

Faherty: “The male crabs you quickly learn to recognize because they’re by themselves. They will mate with a model, if you make a model of a horseshoe crab — the males will congregate around it. They’ll spawn. They’ll spawn with your boot. These are just hormonally-charged animals that are ready to mate with anything. Females are not lonely for long in the horseshoe crab world.”

More here on the effort to study and protect horseshoe crabs.

Photo: Peter Massas, Flickr CC BY-SA 2.0
A horseshoe crab floats by the shore on Union Beach in New Jersey. The species is listed as Near Threatened by the International Union for the Conservation of Nature.

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I’m hearing more and more these days about “good bacteria,” including in a song by singer-composer Will McMillan on the friendly bacteria we humans carry around.

Now, it seems, bacteria found in soil may help to save amphibians from dangerous fungal epidemics. Public Radio International’s environmental news program, Living on Earth, has the story.

“Around the world, fungal diseases have been killing millions of frogs and bats and snakes. And a newly emerging disease in salamanders in Europe is scaring biologists here, so the US Fish and Wildlife Service has introduced a ban on their import to try to protect amphibians in the US.

“But now scientists see some hope in soil bacteria that get onto the salamanders and frogs and apparently protect them. Doug Woodhams is an assistant professor of biology at UMass Boston, who’s been working with amphibians in Panama – and he explained what his team has found to Living on Earth’s Helen Palmer.

“WOODHAMS: Some of the amphibians have beneficial bacteria that live on their skin and these have antifungal properties.

“PALMER: This is kind of like having good bacteria in your gut, for instance, that stop you from getting sick. … Is there any evidence that  good bacteria actually work against devastating funguses?

“WOODHAMS: Yeah, there’s quite a bit of evidence. Many of the bacteria that we can culture from some amphibian species are able to inhibit the fungus in culture. We also have some population-level data that shows populations that tend to have these antifungal bacteria can persist with Bd in the environment and survive. …

“Bd is the chytrid fungus that’s been spreading around the world and devastating amphibian populations. So salamanders, frogs, toads. Populations that tend to have more of these beneficial bacteria seem to be surviving, and populations that don’t have as many of the individuals that have these bacteria seem to disappear. …

“The next thing we want to try is adding some of these bacteria, not just to petri dishes, but to soil and see if infected amphibians can be cleared of their infection by being housed on soil that’s been inoculated with these bacteria. …

“There are other fungal pathogens, so it could be something that you could apply in a cave that could reduce White-nosed syndrome [in bats]. Also, rattlesnakes have been recently affected by fungal disease during hibernation, so it could be applied into a rattlesnake den.”

More on the science here.

Photo: Matt Becker
The Appalachian Mountains are home to this Cow Knob Salamander, Plethodon punctatus, from George Washington National Forest, Virginia.

 

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